This video is a short introduction to the 10X Genomics desktop single-cell browser software called "Loupe Cell Browser." In 7 minutes, I attempt to explain the basic features of the software and how you can use it to quickly get a view onto your single-cell data.
We in the Iowa Institute of Human Genetics Bioinformatics Division have the pipelines and expertise necessary to help you process and analyze your 10X single-cell experiments, including 3' and 5' gene expression and VDJ sequencing. Please call or email our Director, Diana Kolbe (diana-kolbe@uiowa.edu) for an appointment to discuss your project!
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Please note: I am not affiliated in any way with 10X Genomics, and I do not receive any compensation for this review. I have no conflict of interest to report. I am simply giving my opinion on a piece of software that I like and have used recently.
You can find more about this software and 10X single-cell workflows here:
www.10xgenomic...
You can read more about us here:
medicine.uiowa...
And about me here:
www.michaelchim...
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