Complete gene set enrichment analysis (GSEA) R tutorial in 3 minutes. I show you which R packages to install, how to run them on your differential expression output, and how to plot the results.
My example is Deseq2 output, but you can use this on any set of genes you can rank based on LFC, P-value, etc. You can use data from outside of R if you read in the csv.
Notebook:
github.com/mou...
More info and examples can be found:
bioconductor.o...
Негізгі бет Ғылым және технология 3 minute GSEA tutorial in R | RNAseq tutorials
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