I'm just making a list for myself it may be incomplete 12:21 Exmples of protein motifs 19:29 Ways to describe a motif 33:00 Motif finding problem 37:38 Gibbs sampling
@sfmambero
4 жыл бұрын
2:55 lecture begins
@wimthiels638
8 жыл бұрын
thanks. remark at the end regarding the shifted motifs is indeed important. without it it's hard to understand the reasoning behind bias toward G after the first iteration. (so it will also be biased towards A, but those biases are resolved to G through the shifted motif heuristic)
@jackc7069
7 жыл бұрын
I'm having a bit of trouble running the code for question 1 on problem set 2 (fm-search.py). It doesn't output anything onto out.txt. Can anybody help?
@hughxiao7078
4 жыл бұрын
Which category does this algorithm suite, HOMER, fall under? Enumerative, Probabilistic or Deterministic? Or maybe a collection of them all, like the WebMotifs mentioned at 1:15:14. homer.ucsd.edu/homer/introduction/basics.html
@aref6561
7 жыл бұрын
now how to do it in R or Python etc? Anyone knows?
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