This tutorial shows you how to install and run fastqc on a linux environment. fastqc is a bioinformatics tool used for quality control
Consultation
________________________________________________________________________________________________
calendly.com/b...
Support my work
________________________________________________________________________________________________
www.buymeacoff...
www.paypal.com...
One-on-One coaching(Audio Call)
________________________________________________________________________________________________
clarity.fm/vin...
Get more bioinformatics tutorials on Patreon
________________________________________________________________________________________________
/ bigdataanalytics
Subscribe to my channels
________________________________________________________________________________________________
Bioinformatics: / @bioinformaticscoach
Data Science: / @datasciencecoach
Short Clips: / @bioinformaticscforbeg...
Reach out
________________________________________________________________________________________________
bioinformaticscoach@gmail.com
Materials
_______________________________________________________________________________________
fastqc documentation www.bioinforma... github.com/s-a... download page www.bioinforma...
link to example data
www.ebi.ac.uk/...
How to install java
linux(openjdk): • Install java in linux ...
windows(SE): • Install JAVA SE in Win...
windows(openjdk): • Java installation in a...
Chapters
_______________________________________________________________________________________
00:03 Introduction
00:51 PC requirement
01:20 How to install java
01:41 Go to fastqc download page
02:18 Fetch the download link
02:30 Open the terminal
02:35 Move to the home directory
02:40 Usee wget to download the binaries
03:16 Unzip the file
03:56 Add execution rights to the fastqc executable
04:22 Test fastqc
04:51 Open the fastqc graphical interface
06:56 Move the fastqc directory to the apps directory
08:09 Move to the fastqc directory
08:27 Get the path of fastqc executable
09:10 Move to the home directory
09:17 Make a backup of the .bashrc file
09:48 Open .bashrc file
10:05 Add the path of fastqc to the system PATH
10:36 Save the changes and exit
10:44 Open a new terminal for the changes to take effect
10:57 Test fastqc
11:31 Test fastqc with an example data
11:40 Download the example data
13:05 Test fastqc using graphical interface
20:51 Test fastqc on the commandline
quality control of sequence data
fastq files
QC bioinformatics
Quality control bioinformatics
Keywords
fastqc
fastqc tutorial
fastqc linux
fastqc commandline tutorial
fastqc commandline
fastqc report explained
fastqc command line
fastqc report
fastqc report interpretation
fastqc galaxy
fastqc install ubuntu
fastqc results explained
fastqc analysis
bioinformatics
#bioinformaticsforbeginners #bioinformatics #bioinformática #linuxforbeginners #linux
Негізгі бет Ғылым және технология Fastqc Linux Install and Usage (Commandline & GUI)
Пікірлер