Great video but sir how do we know that which sequences we have to trim from our clade to get best phylognetic tree?
@asifmolbio
2 жыл бұрын
Excluding a sequence is not recommended actually. However, you can make sure that any (specif with odd sequence) distant member belong to this family or not. So, always try to construct the tree of relevant species/or gene family only... We should not omit any clade just to get the best.
@laibaaslam1547
2 жыл бұрын
@@asifmolbio Thank you soo much
@samkhan7536
2 жыл бұрын
Nice video to understand Phylogenatic tree
@asifmolbio
2 жыл бұрын
Glad, it’s helping
@Islamicvideos-2666
2 жыл бұрын
Thanks for video, it’s very helpful
@Kaleem.a.q
2 жыл бұрын
Really great and appritiatable work done by your side....sir u are great
@asifmolbio
2 жыл бұрын
Glad you like it
@hassankarim9451
2 жыл бұрын
Thanks a lot, for such an informative video...
@asifmolbio
2 жыл бұрын
Glad you like it
@thirumoorthy1894
2 жыл бұрын
Nice sir
@keepcalm414
2 жыл бұрын
Nice
@leoncekouadio9843
2 жыл бұрын
thank you for this helpful video
@asifmolbio
2 жыл бұрын
I am glad you like it please let me know if you need something else
@user-kw1qt1qw9r
4 ай бұрын
Sir if we select only one gene family then which one will be selected ? pairwise or maximum ? One more problem i have facing when i slect bootstraps like, 200,300, 500, and 1000 and click on start buton MEGA software is automaticlly disapeard from task bar ? Any soltution
@asifmolbio
4 ай бұрын
always maximum likelihood is better. Right if your computer has low ram, this problem occurs. Use any good computer
@user-kw1qt1qw9r
4 ай бұрын
@@asifmolbio Sir , can you guide me if I have more then 350 genes in my family so when I make gene structure it is in dense form and looking not attractive how can I select high homology with my target gene to make attractive gene structure and motif analysis?
@asifmolbio
4 ай бұрын
Cut short your number of sequences, or consider taking from only a few species
@dilawarabbas05
2 жыл бұрын
Make one Video on ANOVA Software , how to use?
@asifmolbio
2 жыл бұрын
Ok thanks i will, stay connected
@dilawarabbas05
2 жыл бұрын
@@asifmolbio Thanks brother
@snatakaushik6886
2 жыл бұрын
Can we make phylogenetic tree with complete genome sequences?
@asifmolbio
2 жыл бұрын
Did you mean the whole chromosome length?
@snatakaushik6886
2 жыл бұрын
@@asifmolbio yess
@asifmolbio
2 жыл бұрын
I never tried but probably it would be beyond the capacity of this software. Probably professional analyst have special softwares for this . So far i am not sure with your answer
@snatakaushik6886
2 жыл бұрын
Sir actually when I blast my 16s rna sequence it's showing 99% similarity with all the complete genome sequences .Is it possible for a partial sequence to show similarity with complete genome sequences.if yes ,then can I make a phylogenetic tree out of it. Thankyou sir 🙏🏼
@asifmolbio
2 жыл бұрын
Please send me screenshot of your sequence and possibly blast results at asifalikalas@foxmail.com
Пікірлер: 30