This is a basic hands-on tutorial to download sequencing data from SRA NCBI using SRA Toolkit.
In this video, I have demonstrated how to download and configure SRA Toolkit and download sequencing data associated with GSE183947.
Link to GSE183947:
www.ncbi.nlm.nih.gov/geo/quer...
Link to download SRA Toolkit :
github.com/ncbi/sra-tools/wik...
Link to install SRA Toolkit:
github.com/ncbi/sra-tools/wik...
Link to configure SRA Toolkit:
github.com/ncbi/sra-tools/wik...
Link to additional resources:
1. www.ncbi.nlm.nih.gov/sra/docs...
2. www.ncbi.nlm.nih.gov/sra/docs...
Chapters:
0:00 Intro
2:19 Get SRR# ids
5:34 Download SRA Toolkit
7:50 Configure SRA Toolkit
10:00 Download fastq files
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To get in touch:
Website: bioinformagician.org/
Github: github.com/kpatel427
Email: khushbu_p@hotmail.com
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