@@genomewidestudy Excuse me for commenting so much, but can you help me with TBtools. I get a black screen with error.
@WickyReacts
2 жыл бұрын
quite helpful. Thank you
@WickyReacts
2 жыл бұрын
Can i draw the circle figure without including the phylogenetic tree?
@genomewidestudy
2 жыл бұрын
Yes, you can
@genomewidestudy
2 жыл бұрын
Use same option without newick tree.. You will get the circular figure without tree.
@enjoycutness
Жыл бұрын
Awesome
@genomewidestudy
Жыл бұрын
Thanks.for comment
@enjoycutness
Жыл бұрын
@@genomewidestudy where are you from?
@evlampiaparcharidou9882
Жыл бұрын
Hey! Very useful video, thanks a lot! Which type of data do you use as input? What is the data in your excel file? Raw counts or normalised, as for example TMM.? And the way you did the heatmap, is the log2 normalisation used, right? Not z-score.?
@genomewidestudy
Жыл бұрын
thanks for comment
@genomewidestudy
Жыл бұрын
its only a example. you can use any nomaricall data to make the heat map. you can use expressiin data, mean data of you parameters, depends on your analysis
@evlampiaparcharidou9882
Жыл бұрын
@@genomewidestudy Thanks a lot!
@monasalem8229
10 күн бұрын
Thanks, what is the name of program
@MrRamaeri
2 жыл бұрын
Hello Sir, thank you so much for you video. Very nice . I followed this, I am not getting tree using Newick value. Could help me?
@genomewidestudy
2 жыл бұрын
May be something wrong with your newick tree..in copy past or other. Retry
@jennyshah2290
2 жыл бұрын
Very helpful and can you tell me how to get tbtool
@genomewidestudy
Жыл бұрын
it is free sofiware and you can easily download it from any search engin.
@genomewidestudy
Жыл бұрын
Video about downloading and installing tbtool has been uploaded. You can get the guidance. Thanks
@NasirHamad
Жыл бұрын
assalamualaikum sir I have 553 sequences of a virus in fasta file .....how can I make the input for this analysis.....
@genomewidestudy
Жыл бұрын
walaikumusalam. Use the same method and try
@NasirHamad
Жыл бұрын
@@genomewidestudy ur right sir but I don't have the excel file like that .....I have fasta sequences.....how can I make that values
@genomewidestudy
Жыл бұрын
what you want to do exactly. You want to make Phylogenetic tree or want to make the heatmap of your expression data...
@NasirHamad
Жыл бұрын
@@genomewidestudy sir I have orf sequences in fasta file downloaded from ncbi ...I don't have expression data ....how can I do such analysis with this file ???
@genomewidestudy
Жыл бұрын
watch this video kzitem.info/news/bejne/0aCO031jo2JnY3Y
@MamtaSingh-gp9tz
2 жыл бұрын
Hello sir, please let know how we can find gene location on chromosome if only scaffolds information available for a gene in phytozome. I have some sequences which contain only scaffold information.
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