Thanks so much for posting these tutorials, Josh! They are a tremendous help for my work with my thesis. I will be sure to cite your website and add you within the acknowledgments section!
@DuongNguyen-pe1nr
3 ай бұрын
Sorry teacher I have a question, when I add code ./structure -K 1 -o k1run1.txt;....into Windows terminal, it didnot show the information like you that after I press enter the Windows terminal ran and showed "PS C:\Users\user\Pictures\console>" again. I hope you can help me solve this problem. Thank you a lot.
@DrJBanta
3 ай бұрын
Hello, the easiest way to ensure STRUCTURE will run properly is to use my preconfigured virtual machine using VirtualBox. kzitem.info/news/bejne/joFuyK2KiKKFjGk
@DuongNguyen-pe1nr
3 ай бұрын
@@DrJBanta thank you teacher, I already make the Structure from your tutorial, it is so great😍
@leonasstrom1917
2 жыл бұрын
Hi, Thank you for some amazing tutorials, they are very helpful. Is it possible to add location/coordinates to the data, as an extra characteristic? and if so, how would one do that?
@DrJBanta
2 жыл бұрын
Dear Leo, This is a great question. You can feed location data to STRUCTURE by using the LOCPRIOR and USEPOPINFO flags in the settings. See the STRUCTURE manual: www.ccg.unam.mx/~vinuesa/tlem09/docs/structure_doc.pdf
@DrJBanta
2 жыл бұрын
This would require adding columns to your dataset corresponding to the location information, as indicated in the manual.
@DrJBanta
2 жыл бұрын
That said, I think what you really want to do is a SAMOVA. See my tutorial here: kzitem.info/news/bejne/wmamvICZoJ6Umoo
@leonasstrom1917
2 жыл бұрын
@@DrJBanta Thanks for a fast and good answer. I have done a SAMOVA aswell but since I'm looking at fish larva spread with the currents, and where they settle depending on their PLD, I was a bit worried that the SAMOVA puts value in that the location should be "geographically adjacent" (if i have understood how the SAMOVA works correctly). SInce the larvae follow the current and then settle after a certain, unknown, time, it is not sure that locations closer together should have more genetic similarity than one farther away. But i may very well have misunderstood the SAMOVAs calculations.
@DrJBanta
2 жыл бұрын
@@leonasstrom1917 Got it. It sounds like playing with those settings in STRUCTURE will do what you are looking to do. Essentially you want to use the population assignments corresponding to location as priors, and then only assign those individuals to other populations if it really looks that way genetically.
@mortezanaderi4761
Жыл бұрын
Thanks, when I run the ./structure it says is not recognized as an internal or external command,
@DrJBanta
3 ай бұрын
Are you using my preconfigured virtual machine using VirtualBox? kzitem.info/news/bejne/joFuyK2KiKKFjGk
@arjunpal8340
2 жыл бұрын
The tutorial files provided in the video are not available in the website.
@DrJBanta
2 жыл бұрын
Dear Arjun, can you try again? I just tried and I was able to access them.
@arjunpal8340
2 жыл бұрын
@@DrJBanta It is showing that the page you are looking for cannot be found
@DrJBanta
2 жыл бұрын
@@arjunpal8340 Can you try a different browser?
@arjunpal8340
2 жыл бұрын
@@DrJBanta It is the same with different browser
@DrJBanta
2 жыл бұрын
@@arjunpal8340 Try this link: drive.google.com/file/d/1XnbwAz6llZXNcz1bTYhBjPEMF8mma6vW/view
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