Your content and way of explaining is out of the world sir. Thanks a lot for clearing out long term doubt.
@BasicScienceSeries
2 жыл бұрын
Thanks and welcome
@Amir-jn5mo
Жыл бұрын
Amazing video. I had no clue what to even do in pyMOL as it looked intimidating. Now I can easily clean up a protein and focus on presenting the binding pocket im interested in
@BasicScienceSeries
Жыл бұрын
Glad it was helpful!
@DocScoop7
7 ай бұрын
it was so helpful that i immediately subscribed the channel!! sending love from Shanghai
@BasicScienceSeries
5 ай бұрын
Awesome! Thank you!
@adampruska1738
Жыл бұрын
Thank you very much. It was really helpful and speeded up my work efficiency with PyMol
@BasicScienceSeries
11 ай бұрын
Glad it helped! Thank you for your valuable feedback!
@egowong317
9 ай бұрын
This is very helpful - thank you very much Professor!
@BasicScienceSeries
5 ай бұрын
Thank you so much!!
@bangnikabang6501
Жыл бұрын
oh my God. sir, I love you. everywhere else the instruction is so sparse and general. thank you !!!
@BasicScienceSeries
Жыл бұрын
Thank you so much for your kind support!
@manognak7406
28 күн бұрын
HELLO Sir, thanks for this amazing tutorial. How will we know what chains to delete in the protein molecule? ( If the chains are non identical). Is there any criteria for that? Also, can a ligand be in its 2D form for docking?
@BasicScienceSeries
20 күн бұрын
Well by manually selecting the chains and then go to remove object
@marufislam3777
Жыл бұрын
Thank you so much, sir. Can we get more tutorials as you said in this video? Like: "Finding the residues in the ligand binding pocket."
@BasicScienceSeries
Жыл бұрын
Sure thing! Will do my best 🙏🏼Thanks alot 🙏🏼
@vamsivardhan5403
4 ай бұрын
The tutorial was absolutely fantastic and made to involve more but I could not find the link for the continuation of this video regarding labelling for each residue,, can anyone share the continuation of this video link plzz
@BasicScienceSeries
4 ай бұрын
Will try to make more useful more, stay tuned for more 🙏🏻🙏🏻Thank you
@dhruvipatel4144
Жыл бұрын
Hello sir, how do we get XYZ coordinates of a particular ligand and it's interaction with other molecules on the PDB?
@BasicScienceSeries
11 ай бұрын
Use autodock tools
@manishmishra9177
2 жыл бұрын
show sticks, byres all within 5 of ligand For those who coudn't see the screen like me. copy paste this cmd
@BasicScienceSeries
2 жыл бұрын
Use laptop if you want to watch the video it won't be helpful with mobile phones. Thanks for your comment 🙏🏼
@manishmishra9177
2 жыл бұрын
@@BasicScienceSeries Can you make a video on how to calculate the volume of substrate binding site? Thanks in advance... :)
@ikaoktavianawati4736
8 ай бұрын
Thanks, it helps alot. English is not my first language, so it sounds unclear to me.
@israthumayunslifeinchina4996
4 ай бұрын
show sticks, by res all within 5 ligand i was write according to your information but residues not coming, in your video it is also not clear, can you please give me detail
@BasicScienceSeries
3 ай бұрын
Can you provide more details on the issue what command you are following ??
@sarinasarina3973
2 жыл бұрын
thank you sir. everything is going well except when tap the bottom"S" at the underside bar no sequence information occured.
@BasicScienceSeries
2 жыл бұрын
So nice of you : ) Thank you so much for your kind support and for your comment as well.. It should work if you are not able to get the sequence, try reinstalling the software again.
@Yellownealy
Жыл бұрын
Can you do protein-protein binding affinity? Like binding sites of an antibody to a particular cell-surface protein?
@BasicScienceSeries
11 ай бұрын
Use cluspro server
@karenluiselang3423
3 жыл бұрын
Dear, what's the comand for select the residues close to the ligant? Thank you very much.
@BasicScienceSeries
3 жыл бұрын
Check this on out, number of commands with examples: pymolwiki.org/index.php/Selection_Algebra
@ikaoktavianawati4736
8 ай бұрын
yes, since the picture is not clear enough to see 😢
@robertmuller1881
Жыл бұрын
Very clear - thank you
@BasicScienceSeries
Жыл бұрын
Glad it was helpful!
@amalelfoly5944
10 ай бұрын
could you please write the command of show sticks you used
@BasicScienceSeries
10 ай бұрын
Mentioned in the video. Hope it helps.
@vigneshpandi5722
2 ай бұрын
Thanks 😊
@BasicScienceSeries
20 күн бұрын
Welcome 😊
@waqi409
Жыл бұрын
The command is not clearly visible mention in the comments, please
@BasicScienceSeries
Жыл бұрын
Please check the comment section, if it is not posted already, let me know thanks 🙏🏼
@Fordance100
4 ай бұрын
Good video. Fonts are too small.
@BasicScienceSeries
3 ай бұрын
Thanks will work on that 👍🏼
@alchemista947
2 жыл бұрын
when i select chain the ligand also selected i dont know why
@BasicScienceSeries
2 жыл бұрын
Thank you so much for your kind support and for your comment as well.. You need to select the residue option not the chain option at the bottom of the right corner. Play around I am sure you will figure it out. Which molecular you are exploring...
@fatimagenetics
Жыл бұрын
i need to watch next part,,, kindly provide me i haven't found
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