CellOracle is a powerful suite of tools that can perform pseudotime analysis, gene regulatory network analysis, and in silico perturbation analysis on single-cell data in python. This is a simple tutorial covering the basics of CellOracle while analyzing a developmental pancreas dataset.
Notebook:
github.com/mou...
Reference:
www.nature.com...
0:00 Intro
1:07 Prepare
4:15 Pseudotime
8:56 Regulatory
14:20 Perturbation
20:22 Conclusions
Негізгі бет Single-cell pseudotime and gene regulatory analysis with CellOracle
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