The video was recorded live during the SIB course “Single cell Transcriptomics” streamed on 06-08 March 2023.
The course materials can be found in the dedicated GitHub page: sib-swiss.gith...
This video contains information on how to annotate cells captured within a single-cell RNA seq experiment and assign them to cell types. Automatic and manual annotation methods are compared, and the method used by the R package SingleR is explained. A list of databases containing marker genes is also presented.
-Target audience: PhD students, post-docs and researchers in life sciences who are doing bioinformatics analyses and want to get introduced to single cell transcriptomics data analysis.
-Speaker: Dr. Tania Wyss, SIB Swiss Institute of Bioinformatics
Any questions about this talk? Contact: Tania Wyss, Tania.Wyss@sib.swiss
This video is available under the creative commons license CC-BY-4.0
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