In this video I cover how to convert Ensembl gene IDs to Gene Symbols using 3 methods - Biomart's web interface & biomaRt R package, annotables R package and AnnotationDbi R package.
I hope you find this video helpful! Leave your thoughts in the comment section below!
Link to code:
github.com/kpatel427/KZitemT...
Vignettes:
▸ bioconductor.org/packages/rel...
▸ github.com/stephenturner/anno...
▸ bioconductor.org/packages/dev...
Chapters:
0:00 Intro
1:56 Ensembl ID format
3:44 Using BioMart - Web Interface
7:38 Using biomaRt R package
14:31 Using annotables R package
15:48 Using AnnotationDbi - org.Hs.eg.db
18:11 Using AnnotationDbi - EnsDb.Hsapiens.v86
Show your support and encouragement by buying me a coffee:
www.buymeacoffee.com/bioinfor...
To get in touch:
Website: bioinformagician.org/
Github: github.com/kpatel427
Email: khushbu_p@hotmail.com
#bioinformagician #bioinformatics #ensembl #biomart #annotationdbi #annotables #affymetrix #microarray #affy #ncbi #genomics #beginners #tutorial #howto #omics #research #biology #GEO #rnaseq #ngs
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