Simpleaf is a faster and more efficient alternative to other counters, such as cellranger, and it works with other single-cell chemistries. It is a wrapper for Alevin-fry and is made by the same lab that created the Salmon RNAseq aligner.
Simpleaf is still in development as of making this video. Do not be surprised if the workflow changes slightly in the future.
Github notes:
github.com/mou...
references:
combine-lab.gi...
www.nature.com...
Негізгі бет Processing single-cell RNAseq counts with simpleaf (alevin-fry)
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